How to prune a lemon tree – expert tips to keep it in shape

Learn how to prune a lemon tree to maximize fruit production and keep the plant looking its best

lemon fruit on tree
(Image credit: Getty Images)

It’s important to know how to prune a lemon tree if you want a healthy plant abundant with zesty fruit. Lemon trees are a popular addition to patios, and make delightful house plants in conservatories and sunny living rooms, and give a Mediterranean flavor to kitchen gardens

A slow-growing fruit, lemons can take up to a year to go from bud to edible fruit. So patience is key – invest some time pruning your lemon tree now, and you will lay the foundation for a bountiful crop later on.

Whether you have grown lemon from seed or bought it from a garden center, it’s essential that you don’t neglect it and allow it to become overgrown and unproductive.

lemon tree and chair in conservatory

Even potted lemon trees will benefit from a pruning routine

(Image credit: Future/Brent Darby)

How to prune a lemon tree – a step by step guide

Lemon trees should be pruned from their second year onwards, otherwise they can become very leggy, overcrowded with branches, and out of shape. If you're not sure when to prune a lemon tree, the best time is typically from late winter to early spring.

First, make sure you have the right tools for the job. ‘The most important part of pruning a lemon tree is to use very sharp pruners that have been disinfected with rubbing alcohol beforehand,’ says Joseph Marini, principal of At Home with Joseph. 

'Cuts that cause tears can introduce disease or stress, and pruners that have been previously used on diseased plants can cause cross contamination to your lemon tree.’ So make sure you have cleaned your pruning shears before you get to work. 

However, for branches you may need a more substantial tool. 'Typically your lemon tree will be better served with a clean, sharp hand-saw or pole-saw (for higher branches), which will make much more precise, and neat incisions,’ advises Andrew Gaumond horticulturist, botanist, and director of content at Petal Republic. 

This HOSKO manual pole saw from Amazon can be extended up to 10ft in length, meaning it should be easy to rise higher branches for pruning them. 

  1. ‘To start with, remove suckers or basal shoots at the base of the lemon tree,’ says Jospeh Marini. Suckers are very fast growing and often their leaves look different from the grafted part of the tree. If you don’t remove them flush at the base, they will steal water and nutrients from the rest of the tree, so do this as soon as you notice them.
  2. Next, remove any dead, diseased or damaged branches. ‘Any growth that appears discolored, diseased or has been invaded by any pesky insects (such as scale or mealy bugs) should be removed immediately as and when they appear throughout the year,’ adds Joseph.
  3. Thin out branch structures. ‘Over time lemon tree branches will often start to compete with one another for light and nutrient sources,’ says Andrew Gaumond. ‘Thin out overlapping branches, and the overall structure of the tree so it has sufficient aeration and access to light. More mature branches shouldn't be cut flush to the trunk or parent branch – instead, leave at least 5 inches of branch in place, which will better enable the tree to recover from the shock of pruning.’
  4. ‘Where there are double shoots that run almost parallel upwards, cut off the inside shoot,’ advises Sigrid Hansen-Catania, author of Success with Citrus Fruit, available from Amazon.
  5. Sigrid Hansen-Catania also recommends removing shoots that grow horizontally into the crown (cross shoots), making it denser, as well as any weak shoots that hang downwards – these should be cut off at the base.
  6. When pruning a lemon tree, it’s important to think about the shape. ‘A citrus plant is particularly attractive with a shaped crown, and the round crown is characteristic. ‘To do this, target the left side and cut off selected shoots,’ says Hansen-Catania. ‘Do not take any notice of flowers or fruits. The point where you cut should always lie above a leaf.’
  7. Finally, be careful not to cut off too much by following the one third pruning rule. ‘Never prune more than a third of a tree in one year,’ says Jospeh Marini. 

Lemon hanging from branch of lemon tree

Pruning can help a lemon tree to remain productive 

(Image credit: Raimond Klavins/Unsplash)

Pruning potted lemon trees

If you're growing trees in pots, your potted lemon trees should be pruned in exactly the same way as other lemon trees, but you should be conscious of keeping them to a manageable size. 

'Although you can prune the branches to achieve the needed size of the lemon tree, it’s not enough. Lemon trees can grow up to 20-25 feet, but you don’t want them to do that inside your house,’ says experienced botanist Ronnie Collins, who also founded Electro Garden Tools. 

‘Make sure to stop providing the plant with larger pots as soon as it reaches four feet tall. It’s an optimal size for fruiting in a pot. A pot of the right size will prevent the plant from growing larger.’

A lemon tree in a terracotta pot demonstrating the best trees for a small garden.

You can prune lemon trees growing in pots using the same methods as those planted in the ground

(Image credit: Future / Mark Bolton)

Hard pruning citrus trees

Occasionally lemon trees need a hard prune to rejuvenate them. ‘A radical cutting back is the last-ditch means of healing a citrus plant,' says Sigrid Hansen-Catania.

'A lemon tree, for example, that has been overwintered in a room that was not sufficiently bright and too warm will react to these unfavourable conditions with increased loss of leaves. Cutting back will then be the only way to renew the plant and help it to grow healthy shoots. 

'Cut the plant back by about half and at the same time try to bring the crown into shape. The best time to do this is in the spring, before a new growth spurt begins.'

Mediterranean garden with lemon groves

Lemon trees will give your outdoor space a Mediterranean feel

(Image credit: Future / Michelle Garrett)


Can you over prune a lemon tree?

It is possible to over prune a lemon tree, which will impact its fruit production, and potentially kill it. Don’t cut it back by more than a third unless you are attempting to renovate a failing plant, in which case you can cut it back by up to half its current size.

How do you prune a Meyer lemon tree?

A Meyer lemon tree is a hybrid variety from China that is a cross between a lemon and a mandarin. It produces smaller, smoother, sweeter fruit with a thinner skin and is a great variety for growing a lemon tree indoors or in pots. You can prune Meyer lemon trees in the same way as other varieties.

Should I cut the thorns off a lemon tree?

Many lemon varieties are bred not to have thorns, especially grafted varieties, so check to see whether the thorny branch is in fact a sucker. This will be growing from the rootstock below the graft. If so, remove it.

If you have a thornier lemon tree variety, you can remove the odd inconveniently located thorn without risk of harming the plant. However, there is no benefit to removing all of them, and you may cause damage to the plant by doing so.

Can you top a lemon tree?

You should not cut the top off a lemon tree and expect it to survive. If the plant requires a hard prune to renovate it, you should cut the branches by no more than half.

Pruning a lemon tree is key if you want it to remain healthy and producing fruit. Allowing it to become overgrown can impact on the quantity and quality of fruit, so spend the time looking after it if you want to see the best results with this fruit tree

Melanie Griffiths
Editor of Period Living

As editor of Period Living, Britain's best-selling period homes magazine, Melanie loves the charm of older properties. I live in a rural village just outside the Cotswolds in England, so am lucky to be surrounded by beautiful homes and countryside, where I enjoy exploring. Having worked in the industry for almost two decades, Melanie is interested in all aspects of homes and gardens. Her previous roles include working on Real Homes and Homebuilding & Renovating, and she has also contributed to Gardening Etc. She has an English degree and has also studied interior design. Melanie frequently writes for Homes & Gardens about property restoration and gardening.